If you're talking about a complaint within the MBTA police department, so that the people involved get reprimanded or whatever, go back to the headquarters, and tell them why you're there. Someone, however reluctantly, will give you the necesssary forms.
If you're talking about a lawsuit in court, for damages, you can probably forget about it. In most places, you simply can't sue the police for not doing enough to solve a crime, if for no other reason than that allowing that sort of case could lead to a flood of them, clogging the court, and police officers solving the crimes based on who they were afraid would sue them, rather than genuine law enforcement priorities. Even in the best of times, most police departments don't have the resources to investigate everything to the last detail.